A natural alliance: how plant community changes and microbial responses stabilized peatland carbon in a drying climate

Published in Earth & Environment

A natural alliance: how plant community changes and microbial responses stabilized peatland carbon in a drying climate
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Peatlands: Small in area, huge in impact

Peatlands cover just 3% of Earth’s land surface, yet they store over 600 billion tonnes of carbon—more than all the world’s forests combined. These quiet, waterlogged ecosystems are carbon superheroes, capturing atmospheric CO2 and locking it away in deep organic soils for thousands of years. But now, with global warming and more frequent drying, peatlands face a new challenge: ecological transition.

One striking change? The spread of woody plants—shrubs and small trees—into areas once dominated by mosses and grasses. What does this shift mean for carbon storage? How do the hidden microbial players—bacteria and fungi—respond when their plant partners shift? That’s what our team set out to explore.

Woody plants expanding in a southern China peatland (Zhaogongting, photo by Yiming Zhang).

A story from the mountains of southern China

Our research took us deep into the remote Zhaogongting peatland, nestled in the mountains where Hunan meets Jiangxi Province. Each field trip meant hours of hiking narrow forest trails, hauling heavy peat corers and bulky sample bags. Despite the sweat and sore muscles, we were driven by one question: How has this peatland managed to hold onto its carbon through past climate stress?

In the remote Zhaogongting peatland, team members hike narrow mountain trails with coring equipment and samples—part of the fieldwork behind uncovering peatland carbon secrets (photos by Yiming Zhang and Xianyu Huang).

We focused on a period around 8,000 to 6,000 years ago, when the climate became warmer and drier. Using plant macrofossils, microbial biomarkers, and their isotopic “fingerprints” preserved in peat cores, we uncovered a fascinating ecological dance.

Peat core samples from Zhaogongting peatland (photos by Bingyan Zhao).

Woody plants step in—and microbes change their tune

As drying happened from 8,000 to 6,000 years ago, woody plants expanded rapidly, replacing much of the grass-like vegetation. This shift didn’t just change the scenery—it altered the organic composition of the peat, introducing more complex, harder-to-degrade compounds like aromatics. For the microbes living in the peat, this was a game-changer.

We found that bacterial and fungal biomass initially increased during early drying, but soon declined as conditions became more challenging. Microbial heterotrophic activity weakened, likely suppressed by changes in organic matter composition and limited energy sources. In response, microbes have shifted toward more autotrophic or alternative metabolic pathways. This “metabolic switch” helped slow the loss of carbon—an unexpected form of resilience during drying.

A natural alliance: Plants and microbes shield carbon

Surprisingly, during this time of drying and ecological change, the peatland’s carbon accumulation actually peaked—three times higher than in wetter periods. Why? Because woody plants and microbes teamed up, creating a natural defense against carbon loss. During drying, woody plant expansion increased both productivity and the input of more recalcitrant organic matter. But instead of ramping up decomposition to match this carbon influx—as microbes often do under drying conditions—they shifted their metabolism to break down less of it. Together, they built a carbon shield.

Woody plant expansion in peatlands, driven by warm and drying climates, protects carbon storage through enhanced primary productivity, a shift in peat organic matter composition toward a more recalcitrant pool, and an adaptive decline in microbial heterotrophic metabolism. Blue arrows indicate positive effects and red arrows indicate negative effects.

Even more exciting, we found similar patterns in peatlands around the world. Our global analysis of over 150 peatland sites revealed that woody plant expansion often boosted carbon storage, especially in the tropics.

Looking forward: When cooperation holds—and when it breaks

As the climate continues to warm, woody plants are once again advancing into peatlands across the globe. In some places, this shift may not spell collapse. Our findings suggest that when plants and microbes work in quiet synchrony—adjusting what enters the soil, and what is broken down—carbon can remain safely stored, even under drying skies.

But resilience is not boundless. Every ecosystem has its threshold, and peatlands are no exception. When drying becomes severe—when the landscape tips from peatland to woodland—the delicate balance may falter. Microbial decomposition could surge, turning these carbon sinks into carbon sources. What was once a shield might become a release.

These are the transitions we now seek to understand. Our international team is tracing them across climates and continents, asking: where does resilience end, and where does risk begin?

Fieldwork in action: the CERES team from the University of Bristol extracting long peat cores from Cors Caron Bog (left) and Tor Royal Bog (right) (photos by Mike Vreeken).

For us, every step through wetlands, wilderness, and mountain trails is a step into this question. And with each core, each sample, each quiet hour in the lab, we come a little closer to understanding not only how nature defends its carbon—but how we might help it continue to do so.

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Earth Sciences
Physical Sciences > Earth and Environmental Sciences > Earth Sciences
Paleoecology
Physical Sciences > Earth and Environmental Sciences > Earth Sciences > Biogeosciences > Paleoecology
Biogeosciences
Physical Sciences > Earth and Environmental Sciences > Earth Sciences > Biogeosciences
Geochemistry
Physical Sciences > Earth and Environmental Sciences > Earth Sciences > Geochemistry
Biogeochemistry
Physical Sciences > Earth and Environmental Sciences > Earth Sciences > Biogeosciences > Biogeochemistry
Microbial Ecology
Physical Sciences > Earth and Environmental Sciences > Earth Sciences > Biogeosciences > Microbial Ecology

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