World lake day 2025-Celebrating the vital role lakes play in sustaining biodiversity, by highlighting research from BMC series

Is Prussian Carp a new threat in Saskatchewan? How does infection impact fish populations and communities? Is the coexistence of humans and hippopotamuses around Tana Lake possible? How do bacterial communities evolve with nutrient differences? How does water shape fungal diversity
World lake day 2025-Celebrating the vital role lakes play in sustaining biodiversity, by highlighting research from BMC series
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In celebration of World Lake Day (https://www.unep.org/events/un-day/world-lake-day-2025), a United Nations awareness day highlighting the importance of lakes and their sustainable management, we spotlight research from across the BMC series on freshwater ecosystems.

BMC Zoology-The Prussian carp (Carassius gibelio) in Saskatchewan, Canada: current distribution and life history traits of a novel invasive species

A recent study published in BMC Zoology uncovers the spread of invasive fish in Saskatchewan River and its tributaries. The Prussian carp (Carassius gibelio) is an invasive fish species that has spread extensively across Europe, first detected in Alberta in early 2000. By 2018 researchers observed a spike in dead Prussian carp along Stockwell lake, implying Prussian carp had been established for some time in Saskatchewan. Authors developed citizen science program for a survey of the Prussian carp. By Employing  citizen science reports coupled with field surveys and 500,000 social media views to fish submission; the study confirmed Prussian carp were well established in region of Saskatchewan including South Saskatchewan river, lake Diefenbaker and multiple connecting tributaries. Their size ranges from 20mm to 42 cm, with some likely older than 10 years.

Authors noted that the population have a mix of ploidy i.e. diploid, triploid and tetraploid. Most spawning likely occurs during mid-June. This timing of spawning overlapped with that of a variety of native sucker and shiner species, but sperm donors for potential gynogenesis remain unidentified.

The Qu’Appelle Dam acts as a barrier and restricts dispersal in South Saskatchewan River at Lake Diefenbaker. The authors emphasized that it is essential to seriously evaluate the implementation of physical barriers or other active deterrent measures to prevent Prussian carp from accessing the deep-water intake. Additionally, it is recommended that management should prioritize minimizing their local ecological impacts and preventing further dissemination.

BMC Veterinary Research - Prevalence of Ligula intestinalis, histopathological investigation, and associated risk factors in Labeobarbus fish species at Lake Tana, Ethiopia

 Tana Lake is the largest lake in Ethiopia. The study published in BMC Veterinary research reported 16.2% prevalence of tapeworm parasite ligula intestinalis infection impacting the health of Labeobarbus species. 

In a cross-sectional study, 384 Labeobarbus fish were collected from February 2023 to March 2024. Out of the 384 Labeobarbus fish examined, 62 tested positives for L. intestinalis, indicating an overall prevalence of 16.2% in Lake Tana. The parasite reported to cause pathological changes including abdominal swelling, gonadal atrophy, organ displacement, body emaciation, and visceral fibrosis accompanied by discoloration. Histological studies indicated altercation in ovaries, the main changes included fibrosis, infiltration of inflammatory cells, destruction, and atrophy of oocytes. Testicular tissues exhibited hyperemia, necrosis, liver vacuolar degeneration and biliary duct hyperplasia. Hence, gross histopathological findings indicated severe lesions in key organs, especially the gonads resulting in impaired reproduction.

The study identified risk factors influencing infection rate, such as fish size, weight , sampling, location and species. Authors noticed that larger and heavier fish are more likely to be infected.

The study reveals that this has a profound impact on the economy and ecosystem. Lake Tana supports both biodiversity and local fisheries. Due to infections, the decline in fish poses danger to food security and livelihood.  The authors have suggested continuous monitoring, awareness program, integrative approaches and ecological interventions to mitigate this challenge.

BMC Zoology - Distribution range and human-hippopotamus (Hippopotamus amphibious) conflict in the Lake Tana biosphere reserve, Ethiopia

Tana Lake is the largest freshwater lake of Ethiopia. Lake Tana Biosphere Reserve (LTBR) is rich in wildlife, both aquatic and terrestrial and vital habitats of biodiversity conservation. A recent study published in BMC Zoology investigated the distribution range and human hippopotamus conflict in LTBR.

The study was conducted between June 22 and January 2023, around 200 individuals participated in the survey. Estimated total mean population of hippopotamus  reported in the LTBR was 252.7 ± 15.9, with density of 0.07 individuals/km2. The highest population of hippopotamus was recorded in August and lowest in December.

Employing ARCgis researchers assessed habitat suitability revealing that only 4.7% of shoreline was most suitable for hippopotamuses, 48.4% moderately suitable, and 46.9% unsuitable suitable. Factors that influenced habitat were water availability, vegetation and elevation.

Human hippopotamus conflicts were prevalent primarily due to crop breeding and overgrazing. Local communities reported significant crop damage particularly to maize, sorghum, teff and wheat.  To circumvent this, farmers implemented various strategies such as constructing fences, digging ditches around the crops.

The study advocates the need for sustainable conservation strategies, including habitat protection and community engagement to ensure coexistence of hippopotamus and local communities.

BMC Microbiology - Extreme trophic tales: deciphering bacterial diversity and potential functions in oligotrophic and hypereutrophic lakes

The recent study published in BMC Microbiology explored bacterial diversity and potential function of two lakes in Yunnan Plateau in Southwest China with different nutrient condition. 60 water samples were collected from Lake Fuxian-deep water freshwater (oligotrophic) and shallow Lake Xingyun (hypereutrophic) during different hydrological periods from (April 2020 to January 2021 ). The researcher employed 16srRNA high throughput sequencing to explore distinct community structures and metabolic potentials.

The finding revealed that hyper eutrophic ecosystem exhibited higher α and β diversity compared to oligotrophic ecosystem. Actinobacteria dominated the oligotrophic lake while cyanobacteria , proteobacteria were more prevalent in hypertrophic lake. Additionally, functional analysis indicated that oligotrophic lake bacteria were associated with ethanol oxidation, metalloprotein compartmentation, aromatic compound degradation and  nitrogen respiration underscoring the vital role of bacteria and carbon nitrogen cycle.  In hypereutrophic lake bacteria exhibited function related to ureolysis , human pathogen, animal parasite and symbionts; highlighting human activity related disturbance and potential pathogenic risks.

The study sheds insights into the complex relationship between trophic states and highlighting the significant differences in diversity community composition and network characteristics in oligotrophic  and hyper eutrophic lakes.

BMC Microbiology-Environmental stressors drive fungal community homogenization and diversity loss in plateau freshwater lakes

Fungi has a crucial role to play in aquatic ecosystems. They recycle nutrients, break down organic matter and aid in purifying water. Fungi are known to be exposed to more complex environments in aquatic ecosystems than in terrestrial environments, leading to significant heterogeneity in their abundance across habitats. In the  recent study published in BMC Microbiology, authors carried out study at Three plateau lakes Yunnan Province, China namely Chenghai Lake, Erhai Lake and Lugu Lake.

Plateau lakes represent unique high-altitude ecosystems characterized by distinct physicochemical gradients such as fluctuations in dissolved water, temperature variations and geographical isolation. In the study the Samples were collected from 6 sites, high-throughput sequencing was carried out to understand the influence of geographical and physicochemical factors on fungal communities.

Prominent differences in community structure across the three lakes were observed. Fungal diversity in Chinghai Lake (poor water quality) was significantly lower than in Lugu and Erhai Lakes, and had more homogenized community, the other two lakes displayed greater internal community variation. While each lake maintained unique fungal taxa , only 27.64 % of Operational Taxonomical Unit (OTU) was shared across three lakes.   Altitude, potassium and Ph were prominent physicochemical variables shaping community structure.

Notably, the fungal networks in all three lakes were dominated by positive correlations, with Lugu Lake (83%) exhibiting the highest proportion of positive associations compared to Erhai (62%) and Chenghai (72%) Lakes. The study has aid in understanding the impact of environmental stress can profoundly influence fungal and microbial community, with climate change and further human activities can alter microbial community.

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Ecology
Life Sciences > Biological Sciences > Ecology
Community and Population Ecology
Life Sciences > Biological Sciences > Ecology > Community and Population Ecology
Marine and Freshwater Sciences
Physical Sciences > Earth and Environmental Sciences > Environmental Sciences > Water > Marine and Freshwater Sciences
Microbiology
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  • BMC Microbiology BMC Microbiology

    This is an open access, peer-reviewed journal that considers articles on all microorganisms - bacteria, archaea, algae and fungi, viruses, unicellular parasites and helminths.

  • BMC Zoology BMC Zoology

    This is an open access, peer-reviewed journal that considers articles on zoology, including comparative physiology, mechanistic and functional studies, morphology, life history, animal behavior, signaling and communication, cognition, parasitism, systematics, biogeography and conservation.

  • BMC Veterinary Research BMC Veterinary Research

    This journal considers articles on all aspects of veterinary science and medicine, including the epidemiology, diagnosis, prevention and treatment of medical conditions of domestic, companion, farm and wild animals, as well as the biomedical processes that underlie their health.

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Current trends and future directions in mycology

Fungi are a diverse ubiquitous group of eukaryotic organisms, comprising e.g. unicellular yeasts as well as multicellular filamentous microorganisms and mushrooms. They exhibit remarkable morphological and ecological diversity and fulfil a wide array of biological and ecological roles as pathogens, decomposers, and mutualists. The field of mycology, dedicated to the study of fungi, has gained increasing importance in recent years, owing to both the beneficial and harmful impact of fungi on human health, agriculture, and the environment.

Recent advances in next generation sequencing, multi-Omics technologies, molecular biology and bioinformatics have significantly enhanced our understanding of the biology and ecology of fungi, as well as the complex interactions within fungal communities and their habitat. Research and innovation in fungal biotechnology have led to the development of antifungal agents, biocontrol methods, and the application of fungi in bioremediation and sustainable biofuel production. Meanwhile, research on fungal ecology has deepened our knowledge of the impact of fungi on ecosystem functioning and the implications of climate change on fungal diversity and distribution.

In support of United Nations’ Sustainable Development Goal 3 (SDG 3, Good Health and Well-Being), BMC Microbiology launches the Collection Current trends and future directions in mycology. This Collection invites contributions to current research and future perspectives in mycology, covering a wide range of topics e.g., related to the fungal ecological roles and response to environmental changes, as well as novel biotechnological applications of fungi. Research without a clear focus on fungi, fungal communities, or host-fungi interactions will not be considered. We invite researchers and experts in the field to submit research articles covering a broad range of topics, including, but not limited to:  

Molecular mechanisms in the development and pathogenesis of fungi

Parasitic fungi as models to study host-pathogen interactions

Taxonomy and phylogeny of fungi, with particular interest in poorly studied habitats and extreme environments

Resolving species complexes and generic concepts of speciose fungal genera

The role of saprotrophic fungi in nutrient cycling and ecosystem functioning

Diversity and ecological significance of endophytic fungi for plant health

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All manuscripts submitted to this journal, including those submitted to collections and special issues, are assessed in line with our editorial policies and the journal’s peer review process. Reviewers and editors are required to declare competing interests and can be excluded from the peer review process if a competing interest exists.

Publishing Model: Open Access

Deadline: Jan 30, 2026

The skin microbiome

The skin is the largest organ of the human body, colonized by a diverse and complex community of microorganisms, including bacteria, fungi, and viruses. The so-called ‘skin microbiome’ can affect human health, and its imbalance and dysbiosis can contribute to skin diseases. As a first primary protective barrier, the skin indeed plays a crucial role in human health by preventing the invasion of pathogens. Skin microbiome composition and associated diversity, depend on the microecology of the skin surface, available nutrient profile, and its topographical location in the body, as well as on various host-related and environmental factors. Moreover, the skin microbiota can be modulated by the cutaneous innate and adaptive immune responses, often resulting in dynamic interactions between skin-populating microorganisms.

Over the past decade, researchers have described the skin microbiome in unprecedented detail, revealing e.g. extensive communication between bacteria, skin cells and immune cells, and complex multispecies communities that affect skin health and immune responses. In support of United Nations’ Sustainable Development Goal 3 (SDG 3, Good Health and Well-Being), BMC Microbiology launches the collection ’The skin microbiome’. This collection aims to explore research on skin microbiome and their interactions with the human skin, the role of the skin microbiome in human health and disease, as well as novel approaches for the modulation, bioengineering or rebuilding of the skin microbiota. Research without a clear focus on skin microorganisms, host-microorganism interactions and/or microbiomes will not be considered. We invite researchers and experts in the field to submit research articles covering a broad range of topics including, but not limited to:

Interactions between microbiota and human skin

The role of skin microbiota in human health and disease

Skin microbiota colonization, assembly, diversity and ecology

Skin microbiome modulation by the skin immune system

The host skin barrier and microbial infection

Skin ageing and the skin microbiome

The prevention, diagnosis and treatment strategies for microbe-related skin conditions in health and disease

Multi-Omics approaches applied to skin microbiome research

Modulation of skin microbiota and skin-microbiota interactions using synthetic biology approaches

Modulation, manipulation and restoration of the skin microbiome in health and disease

The gut-brain-skin axis

Modeling the skin microbiome

All manuscripts submitted to this journal, including those submitted to collections and special issues, are assessed in line with our editorial policies and the journal’s peer review process. Reviewers and editors are required to declare competing interests and can be excluded from the peer review process if a competing interest exists.

Publishing Model: Open Access

Deadline: Jan 30, 2026