Triggering nanofiber nucleation upon heating

Synthetic supramolecular polymers generally melt as they are heated and form again as they are cooled. We reversed this paradigm with a DNA-polymer that transformed from a solubilized state at room temperature to long nanofibers above 90 °C. Once cooled, the metastable fibers slowly disassembled.
Published in Chemistry and Materials
Triggering nanofiber nucleation upon heating
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Microfilaments and microtubules in cells fulfill a variety of functions including controlling cell movement, changes in cell shape, and molecular cargo transport. To carry out these dynamic functions the filaments and tubules must be transformable: they need to elongate and shorten, assemble and disassemble. What makes this possible is the requirement of energy input to drive their assembly. Similarly, some natural fibers such as collagen have been shown to require heat input to trigger their self assembly when studied outside the cell1.

Most synthetic supramolecular fibrous systems rely on directional hydrogen bonding to guide their formation; however, these intermolecular interactions are static and decrease in stability as temperature increases. Building synthetic systems that resemble biological ones requires a different set of design parameters.

At the end of my PhD, my departure was delayed due to the lingering pandemic. Thankfully, my supervisor Prof. Hanadi Sleiman was incredibly generous and supported my stay as long as necessary. This additional time allowed me the luxury to investigate some more unusual findings from my thesis that we had previously been unable to completely interpret. One of these was the discovery of a series of DNA-polymers that broke the rules of traditional block copolymer theory2. Increasing their hydrophobic character caused their self-assembled morphology to transition from long nanofibers (Figure 1) to very short cylinders and spheres – the opposite trend as predicted. We also found that the heating rate was critical for controlling the length of the fibers, rather than the cooling rate, and that heating drove fiber formation through a nucleation-growth mechanism.

Figure 1: Fluorescent microscopy (total internal reflection fluorescence) images of supramolecular nanofibers formed from a DNA-polymer.

Through the contributions of various colleagues and collaborators, we found that the explanation for this unusual behaviour was the requirement for the DNA-poymer to assume a specific conformation in order to form fibers. Heating provided the necessary energy input to convert the DNA-polymer from a globular state to a structured one. At room temperature the DNA-polymer was compeltely soluble in aqueous solution, but upon heating nanofibers remarkably nucleated and elongated, growing longer as the temperature increased beyond 90 °C (Figure 2). Further, we found that the propensity to form the high-energy conformation was dependent on the DNA-polymer length: more hydrophobic character was geometrically unsuited for fiber-formation.

Figure 2: Mechanism of assembly for the DNA-polymer

So if heat was required to drive the nanofiber formation, what happened when the fibers returned to room temperature? We found that the nanofibers were metastable: once cooled they slowly disassembled and mixed. In this way, our system resembled biological ones, where the default state is unassembled, and energy is needed to grow fibers when desired. Another parallel we saw between our DNA polymer and biological systems was the need for the DNA-polymer to assume a specific conformation, much like polymer folding.

Finally, we showed that the metastable fibers could be stabilized through the addition of a small molecule that formed a network of hydrogen bonding between the DNA sequences on the outside of the fibers.  In this way we showed that the DNA segment of the fibers has utility by virtue of its highly specific molecular structure.

We predict that our system and ones like it will find applications in materials such as stimuli-responsive biomaterials and soft robotics as a supramolecular analogue of lower critical solution temperature (LCST) polymers.

References

  1. De Greef, T. et al. Supramolecular polymerization. Chem. Rev. 109, 5687–5754 (2009).
  2. Israelachvili, J. N. Intermolecular and Surface Forces, 3rd Edition. (Elsevier Science, 2011).

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Materials Chemistry
Physical Sciences > Chemistry > Materials Chemistry
Supramolecular Chemistry
Physical Sciences > Chemistry > Inorganic Chemistry > Supramolecular Chemistry
Self-assembly
Physical Sciences > Chemistry > Materials Chemistry > Self-assembly
DNA Nanotechnology
Physical Sciences > Materials Science > Nanotechnology > Nanobiotechnology > DNA Nanotechnology

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