Methane (CH₄) is the second most potent greenhouse gas, after carbon dioxide. Lakes are a significant source of methane (CH₄) to the atmosphere, with emission levels comparable to those from agriculture, which is the primary human activity contributing to the rise of atmospheric CH₄. The emissions of CH₄ from lakes are determined by the balance between CH₄ production—via methanogenesis in the sediments—and CH₄ loss through microbial oxidation. CH₄ serves as substrate for certain bacteria (known as methanotrophs) as a source of energy and biomass.

 We conducted a study across 79 African lakes, ranging from very low-productivity lakes with clear water to highly productive lakes with green water, colored by the presence of microalgae (phytoplankton). The main finding of our study is that CH₄ oxidation increases significantly with the quantity of microalgae. The surface of these microalgae is colonized by bacteria that live together in a mutually beneficial association. Among the bacteria attached to the phytoplankton are methanotrophic (methane-consuming) bacteria. Consequently, the more abundant the microalgae, the more abundant the methanotrophic bacteria, and the more intense the CH₄ oxidation becomes.

This has significant implications for CH₄ emissions from lakes. In a previous study, we demonstrated that an increase in phytoplankton biomass in lakes leads to greater CH₄ production within the sediments, as phytoplankton detritus serves as a substrate for CH₄-producing microorganisms. Our study therefore shows that water pollution (eutrophication) which increases the amount of phytoplankton in lakes and triggers CH₄ production in the sediments, simultaneously promotes the growth of methanotrophic bacteria attached to the phytoplankton, which then assimilate the CH₄. Were it not for these methanotrophic bacteria attached to the microalgae, the amount of methane released into the atmosphere would be even greater.

Finally, due to the presence of large quantities phytoplankton in lakes, and methanotrophic bacteria attached to phytoplankton cell we also showed that methane oxidation in lakes in higher than in the ocean and than in rivers, which we quantified in a separate study.