The bare retinal chromophore from visual photoreceptors shows an ultrafast photoisomerization dynamics

To what extent may the ultrafast photoresponse of retinal-containing proteins be ascribed to their chromophore and its quantum nature? And what causes it to be much faster than in solutions? As we here demonstrate, the intrinsic retinal photoisomerization in the gas phase may indeed be very fast.
Published in Chemistry
The bare retinal chromophore from visual photoreceptors shows an ultrafast photoisomerization dynamics

The interaction of molecules with light is central to vital activity of living organisms. Photosynthesis, vision in vertebrates, solar energy harvesting and conversion are all triggered by absorption of a photon. These processes are remarkably efficient, and many scientific efforts are being made to elucidate the role played by the protein environment in their primary events, which occur on a timescale down to sub-picoseconds. Light-absorbing molecules, the so-called chromophores, lie at the heart of the photoactive proteins. Vision is an important example, where a single chromophore, 11-cis retinal in the protonated Schiff-base form, is responsible for absorption of light in visual Opsin proteins.

Dim-light visual pigment Rhodopsin
Dim-light visual pigment Rhodopsin. Left: Protein structure, with the retinal chromophore inside (depicted in blue). A few water molecules are shown in red. Right: Structure of the 11-cis protonated Schiff-base retinal chromophore covalently bound to the protein through the Schiff-base linkage and stabilized by the counterion inside the ligand-binding pocket in Rhodopsin.

The primary step in vision, the 11-cis to all-trans photoisomerization inside the protein, is one of the fastest processes in nature, where nuclear rearrangements along the reaction pathway occur within hundreds of femtoseconds. On the other hand, the reaction is about ten times slower in solutions. A fundamental question is: do proteins speed up the reaction, and if so how? – or does the protein scaffold simply protect the chromophore and let it respond to what may be considered its "natural" ultrafast timescale?

This question has remained unanswered since George Wald was awarded the Nobel Prize in 1967 for his pioneering work on color vision. It is normally assumed that the role of the protein is to speed up the reaction. Here, we have tested this hypothesis directly and performed the first time-resolved pump-probe experiments on the protonated Schiff-base retinal in vacuo. From the experimental side, the problem arises when dealing with positively charged chromophores, since a proper molecular response should be found that is sensitive to a probe pulse. Molecular anions have been considered for years in other laboratories, where detection of photoelectrons is readily available. Reports of dynamics in cations are, on the other hand, rare.

We have developed a new 2D time-resolved method to address both excited-state lifetimes and ground-state recovery of molecular anions as well as cations. This work is built upon our previous research (Phys. Rev. Lett., 2016, 117, 243004, J. Am. Chem. Soc., 2017, 139 (25), pp 8766–8771), which combines the SAPHIRA ion storage ring with a femtosecond laser system (Aarhus University). Identification of the absorption of two consecutive (pump and probe) photons is provided by the time, at which the molecular action (dissociation) eventually takes place when molecules return to the ground state; hence time in two dimensions – the statistical fragmentation time and the pump-probe delay.

By combining measurements with high-level ab initio calculations carried out using high performance computing resources at Lomonosov Moscow State University, we are now able to provide a real time reference for photoisomerization. As we demonstrate here, the intrinsic photoisomerization may indeed be very fast – hundreds of femtoseconds for the 11-cis isomer, and slow – several picoseconds for the all-trans isomer. This is traced to different energy barriers in the excited state of these isomers. Importantly, we show that the ultrafast photoresponse of visual photoreceptors is directly related to the intrinsic properties of the retinal chromophore, thus shedding new light on the role of the protein environment and improving our knowledge about the functioning of retinal-containing proteins.

Retinal photoisomerization
Retinal photoisomerization in the gas phase. Excited-state and ground-state potential energy curves along the 11-cis to all-trans and all-trans to 11-cis isomerization coordinates. Formation of the 11-cis isomer is greatly favored for all-trans chromophore when isolated. Based on our findings, we conclude that the visual photoreceptors rely on the ultrafast intrinsic photoresponse of their 11-cis chromophore, whereas bacterial rhodopsins tune the photoresponse of the all-trans chromophore, thus changing both the timescale and specicity of the photoisomerization.

We believe that knowledge at the local molecular level is imperative, like the significance of knowing the molecular structure of DNA for genetics. This may not be enough to fully account for the functioning of entire proteins; however, our results certainly open up a new physical dimension to protein research through establishing an essential reference for dissecting the complexity of biosystems and providing a link between the photophysics and photochemistry of photoactive proteins and their chromophores.

Read more details in our publication:
H.V. Kiefer, E. Gruber, J. Langeland, P.A. Kusochek, A.V. Bochenkova, L.H. Andersen 
Intrinsic photoisomerization dynamics of protonated Schiff-base retinal
Nature Communications 10, article number 1210 (2019); DOI:10.1038/s41467-019-09225-7

The text is written by Anastasia V. Bochenkova and Lars H. Andersen

Please sign in or register for FREE

If you are a registered user on Research Communities by Springer Nature, please sign in

Subscribe to the Topic

Physical Sciences > Chemistry

Related Collections

With collections, you can get published faster and increase your visibility.

Applied Sciences

This collection highlights research and commentary in applied science. The range of topics is large, spanning all scientific disciplines, with the unifying factor being the goal to turn scientific knowledge into positive benefits for society.

Publishing Model: Open Access

Deadline: Ongoing